In general, an influence diagram is well-suited to environmental management decision making due to its ability to represent both management options (through decision nodes), and uncertain effects of environmental factors (by placing appropriate distributions on the associated chance nodes). If reliable mechanistic or statistical models are available for subunits of the environmental process being managed, these can be embedded in the influence diagram to create a single model that is informed by both quantitative models and the qualitative knowledge of experts.
As the consistency analysis example showed however, a drawback to estimating a mixed influence diagram that does not have an analytical likelihood function is high computation expense. Improvements in algorithms and/or hardware will be needed before all parameters in such an influence diagram can be jointly estimated.
id, the analysis software component of the author's EMS for cheetah management (see Sections 2.2.3 and 1, respectively) was used to perform all of the above computations and produce all associated maps and map overlays. id can also compute descriptive statistics, represent spatio-temporal chance nodes in an influence diagram (see Haas (1995)), and optimally redesign a monitoring network (see Haas (1992)).
Note that much of the cheetah viability influence diagram consists of geographic nodes and geographic information. This inclusion of geography may seem intuitively obvious but the integration of GIS and stochastic viability models, as can be seen above, is not trivial. The need for such integration has been known for some time, see Norton and Possingham (1993). Here, examples of such integration are the percent coverage computations in Tables 2 and 3, and the maps of Figures 3 and 5.
Consistency Analysis Algorithm
Let
be a goodness-of-fit statistic that measures the
agreement of an influence diagram's joint distribution identified by
the values of
and the (possibly) incomplete sample, S.
Let
be the agreement
between the influence diagram's hypothesis distribution (identified by the
values of
) and the influence diagram's distribution
identified by the values of
. Let gsmax be the unconstrained
maximum value of
over all
and let
be
the parameter values that correspond to this maximum. Let
ghmax be the unconstrained maximum value of
over all
. Up to sampling variability in the estimation of
,this value is
. The consistency analysis estimator maximizes
where, as discussed above,
is the analyst's priority of having
the consistent distribution agree with the hypothesis distribution
as opposed to agreeing with the empirical distribution.
Let
be the consistency analysis estimate of
.If the influence diagram consists of only qualitative chance nodes and the
sample is incomplete, a value for
can be found such that
the consistent model exactly reproduces the empirical distribution of
the observed nodes. This is the case studied in Haas (1991b).
The idea of consistency analysis is to find parameter estimates
such that, under the priorities dictated by cH, the fitted
model is as close as possible to both
the model defined by the substantive theory and to the
model suggested by the sample. Consistency analysis is best used as a
sequential learning procedure:
from one sample is used as
in the consistency analysis
conducted with the next sample.
The function gS(.) measures how close a model with parameter values
agrees with the sample.
When some of the model's variables have not been observed,
the incomplete sample can only be compared to the PDPF
of these remaining or observed chance nodes, called here the
marginal PDPF.
Finding parameter estimates that result in the unconstrained maximum of
is called Minimum Distance (MD) parameter estimation and
was first studied analytically by Wolfowitz (1957).
MD estimation is now known to be robust to
model misspecification (see Bickel et al. (1993) and Lindsay (1994)).
Often, the influence diagram's decision nodes effectively define
independent influence diagrams given
each combination of values on these nodes. Say that there are d
unique combinations of these nodes.
If the sample is a time series, the model's PDPF should capture
the temporal dependence structure. Let
be the vector of
observed chance nodes at time t under decision node combination i.
Say that these nodes are observed at m times,
. Then,
a PDPF is needed for the random vector
. Because
and
are independent for
, the PDPF
of
is the product of the constituent joint PDPF's:
.
Using nMC simulated realizations from the influence diagram model
of
,the PDPF of
can be estimated with the local gaussian kernel
estimator (Thompson and Tapia 1990, p. 180).
Say that S consists of observations
on the variables
.For this particular sample, the value of the marginal likelihood function
can be estimated with this simulation-based density estimator, i.e.,
.Further, if cH = 0 and
,then
is exactly the MML estimate of
.
Let pfe() be the the empirical PDPF of the observed variables. Another option is to define both gH(.) and gS(.) as the negative of a Kullback-Leibler Divergence (KLD) measure, i.e.,
![]() |
(5) |
![]() |
(6) |
Cressie and Read (1984) give a class of objective functions for MD
parameter estimation: for
and
,find
such that
is minimized. Maximum likelihood, minimum Hellinger distance,
and minimum Kullback-Leibler Divergence
correspond to
, and 1, respectively (see
Lindsay (1994)). Note that ML is an MD estimator. If n=1,
when
and 0 otherwise.
In the cheetah example above,
negative Hellinger distance is used to measure agreement with
the sample of size one, i.e.,
.Also for this example, due to limited computational resources,
measures only the agreement in the first moment between the
consistent and hypothesis distributions. This is accomplished by
defining
to be the negative Euclidean length of the
difference between two sample mean vectors. The first
is computed over a Monte Carlo sample of 20 realizations from
and the second from a size-20 sample drawn from
.These definitions of
and
makes consistency analysis a penalized MD estimator.
Interpretation and Assignment of cH
Consistency analysis uses a point assignment of the parameters
to represent the substantive science theory, and
cH to represent the analyst's priority weights of having the consistent
distribution agree with the hypothesis and empirical distributions.
Because these two objectives are being simultaneously optimized,
consistency analysis does not force the analyst to ``put
his/her eggs all in one basket,'' i.e.,
is not solely a
function of prior knowledge nor solely a function of the sample.
The following heuristics can be used to guide the selection of a value for cH:
Consistency Analysis Procedures
Before an influence diagram should be trusted to aid ecosystem management decisions, its reliability should be assessed. An influence diagram whose forecasts have excessively high variance (low predictive validity) should not be used to formulate policy. To this end, the RMSPE of policy-relevant output variables is always calculated to provide an assessment of the model's prediction skill.
The consistency component of consistency analysis always entails
the computation of (1)
parameter estimates that are as consistent as possible
with both prior theory and the sample, and (2) the RMSPE.
If computational resources permit, the Coefficient of Variation (CV) is
also computed for each parameter estimate using the delete-1 jackknife.
The
is defined to be
where
![]() |
(7) |
The analysis component of consistency analysis involves the following activities:
Computational Implementation of Consistency Analysis
Consistency analysis is implemented by the author as follows.
The logic sampling (Henrion 1988) algorithm is used to simulate
realizations of the influence diagram.
The ``complex'' constrained optimization algorithm of Box (1965) is used to
maximize
subject to the constraints of valid parameter
values in
and valid conditional distributions defined by
.The same sequence of random numbers is used for each evaluation of
to ensure smoothness of this objective function.
Comparison of Consistency Analysis With Other Methods
Consistency analysis can be viewed as a penalized goodness-of-fit parameter estimation method. See Easterling (1976) for a discussion of parameter estimation via maximization of a goodness-of-fit statistic. Viewed this way, the penalty function is the deviation from the hypothesis distribution.
Consistency analysis has similarities with Minimum Discrimination Information (MDI) parameter estimation (Gokhale and Kullback 1978). The function relating model parameters to probabilities of the model's joint events (called external constraints by Gokhale and Kullback) is given by the recursive factorization of the influence diagram's joint probability distribution. Consistency analysis differs from MDI in that no functional relationships between model event probabilities and the empirical PDPF (called internal constraints by Gokhale and Kullback) need be satisfied. Also, in MDI the discrimination information statistic measures the distance between the estimated model and the maximum entropy model (constant PDPF over all joint events). The idea of MDI is to minimize this distance subject to satisfying the external and internal equality constraints. In consistency analysis, the maximum entropy distribution is replaced by the hypothesis distribution supplied by the analyst. Further, by manipulating the value of cH, the analyst can change the relative emphasis consistency analysis gives to finding parameter estimates that agree with this hypothesis distribution relative to agreeing with the empirical distribution. Hence, in consistency analysis, no apriori relationships between the estimated model's distribution and the empirical distribution need be satisfied.
In a multi-parameter estimation problem, classical bayesian methods require the analyst to specify an apriori joint distribution for the parameters (for convenience, independence is often assumed). For example, Dickey et al. (1987) require the analyst to specify a joint Dirichlet distribution for the parameters of a contingency table. Hence, not only is the expected value of each parameter needed, but also all higher moments and cross-moments. If the sample is small and/or incomplete, this very strong distributional assumption can have more influence than the sample on bayesian parameter estimates. In this case, justifying this prior, joint distribution of the parameters with arguments from relevant scientific knowledge is critical to establishing the credibility of the resulting parameter estimates. Several areas of scientific inquiry however, lack sufficient theoretical knowledge to completely specify such a distribution. Instead, available theory can often only support the assignment of point values (``best guesses'') to the parameters with no reliable judgements about the the prior uncertainty of such values. One such area is the use of large, complex environmental process models to support environmental management decision making. In such situations, a bayesian approach requires more from the analyst than the analyst can justify.
Consistency analysis is one way to incorporate prior knowledge into parameter estimation without inheriting some of the criticisms of the application of bayesian methods to the model assessment problem. In addition to the above concern of excessive demands on the analyst's prior knowledge, other criticisms of the bayesian approach to parameter estimation include (a) what constitutes a noninformative prior, (b) interpretability of an improper prior, and (c) reliable elicitation of priors. See Dennis (1996) for further discussion on the use of bayesian inference in ecological modeling.
From a bayesian perspective, MML is based on the belief that, before
observing the sample, all parameter value combinations have the same
chance of generating the sample (see Berger (1985, pp. 27, 132)).
Further, MMLE's of parameters that define unobserved
chance nodes are the result of the likelihood of the data on the
observed chance nodes being made as large as possible, i.e., since
no information on the unobserved chance nodes is available, parameter
estimates for the unobserved
chance nodes are based only on the model's structure
and the observed chance nodes. In the absence of any substantive theory for
the process,
these characteristics of MMLE's are reasonable. On the other hand,
with prior substantive theory (including previous empirical studies),
an MMLE completely ignores any prior or
qualitative knowledge about the process and allows absurd
combinations of parameter values
to contribute the same weight to parameter estimation as combinations
having substantive science justification. Through the use of
,consistency analysis downweights such absurd combinations of parameter
values without any need to place a prior joint distribution on the parameters.
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1cNode
Symbol
1cDistribution
1c(Type)
Time
t
fixed
(decision)
Region
q
fixed
(decision)
Manag. Option
m
fixed
(decision)
Reserve Fraction
Rt
geography-derived
(chance)
Unprotected Land Use
U
geography-derived
(chance)
Climate
C
geography-derived
(chance)
Hunting Pressure
Ht
simple discrete
(chance)
Herbivore Count
Bt
dB(t) = B(t)(k0 - B(t))dt
(chance)
![]()
Carrying Capacity
Kt
![]()
(chance)
Birth rate
ft
![]()
(chance)
![]()
Death rate
rt
![]()
(chance)
![]()
Cheetah Count
Nt
![]()
(chance)
![]()
Fraction Detected
Dt
![]()
(chance)
where d = Nt / ra.Loss
L
![]()
(value)
![]()
| q | Hypothesis Values of | Hypothesis Values of |
| Rt's |
C's |
|
| Marsabit | .99, .93 | .70, .28, .01 |
| Eastern | .99, .96 | .13, .82, .04 |
| Samburu | .99, .97 | .23, .53, .12 |
| Tsavo | .99, .48 | .01, .94, .04 |
| Masailand | .99, .94 | .01, .48, .26 |
| Laikipia | .99, .99 | .01, .08, .47 |
| Nakuru | .99, .95 | .01, .05, .40 |
| Western | .99, .99 | .01, .02, .01 |
| Central | .99, .94 | .01, .55, .14 |
| Turkana | .99, .99 | .32, .50, .08 |
| Coastal | .99, .99 | .01, .18, .44 |
| Chance Node and | m | q | Hypothesis Values |
| Parameter Names | |||
| U | do nothing | Marsabit | .75, .23, .01 |
| or | Eastern | .01, .97, .01 | |
| increase | Samburu | .01, .90, .01 | |
| anti-poaching | Tsavo | .01, .97, .01 | |
| Masailand | .01, .77, .01 | ||
| Laikipia | .01, .34, .34 | ||
| Nakuru | .01, .44, .01 | ||
| Western | .01, .28, .01 | ||
| Central | .01, .70, .01 | ||
| Turkana | .01, .97, .01 | ||
| Coastal | .01, .87, .01 | ||
| expand ranching | Marsabit | .80, .10, .05 | |
| Eastern | .10, .80, .05 | ||
| Samburu | .10, .60, .20 | ||
| Tsavo | .10, .80, .05 | ||
| Masailand | .10, .60, .20 | ||
| Laikipia | .01, .05, .90 | ||
| Nakuru | .01, .05, .90 | ||
| Western | .05, .10, .10 | ||
| Central | .05, .10, .10 | ||
| Turkana | .80, .10, .05 | ||
| Coastal | .80, .10, .05 |
| m | Rt | U | Hypothesis Value |
| do nothing | 0-.5 | nomadic-camel | .2 |
| nomadic-cattle | .2 | ||
| ranching | .2 | ||
| farming | .2 | ||
| .5-.99 | nomadic-camel | .3 | |
| nomadic-cattle | .3 | ||
| ranching | .3 | ||
| farming | .3 | ||
| increase | 0-.5 | nomadic-camel | .95 |
| anti-poaching | nomadic-cattle | .95 | |
| ranching | .95 | ||
| farming | .95 | ||
| .5-.99 | nomadic-camel | .95 | |
| nomadic-cattle | .95 | ||
| ranching | .95 | ||
| farming | .95 | ||
| expand | 0-.5 | nomadic-camel | .05 |
| ranching | nomadic-cattle | .05 | |
| ranching | .05 | ||
| farming | .05 | ||
| .5-.99 | nomadic-camel | .2 | |
| nomadic-cattle | .2 | ||
| ranching | .2 | ||
| farming | .2 |
| C | m | k0 |
| very arid | do nothing | 3000 |
| very arid | anti-poaching | 8000 |
| very arid | expand ranching | 2000 |
| arid | do nothing | 3000 |
| arid | anti-poach | 8000 |
| arid | expand ranching | 2000 |
| semi-arid | do nothing | 3000 |
| semi-arid | anti-poach | 8000 |
| semi-arid | expand ranching | 2000 |
| non-arid | do nothing | 3000 |
| non-arid | anti-poach | 8000 |
| non-arid | expand ranching | 2000 |
| Influence Diagram Region, | District | Area | 6cYear | |||||
| Area (km2) | (km2) | 1887 | 1962 | 1975 | 1977 | 1986 | 1990 | |
| Marsabit, 73952 | Marsabit | 1 | 1 | 1 | 1 | 1 | 1 | |
| Eastern, 162139 | Garissa | 43931 | 1 | 1 | 1 | 1 | 1 | 1 |
| Mandera | 26470 | 1 | 1 | 1 | 1 | 1 | 1 | |
| Tana_River | 35237 | 1 | 1 | 1 | 1 | 1 | 1 | |
| Wajir | 56501 | 1 | 1 | 1 | 1 | 1 | 1 | |
| Samburu, 62117 | Isiolo | 25605 | 1 | 1 | 1 | 1 | 1 | 1 |
| Samburu | 20809 | 1 | 1 | 1 | 1 | 1 | 1 | |
| West_Pokot | 5076 | 1 | 1 | 1 | 1 | 1 | ||
| Baringo | 10627 | 1 | 1 | 1 | 1 | 1 | ||
| Tsavo, 20821 | Tsavo_NP | 1 | 1 | 1 | 1 | 1 | 1 | |
| Masailand, 39476 | Kajiado | 20963 | 1 | 1 | 1 | 1 | 1 | 1 |
| Narok | 18513 | 1 | 1 | 1 | 1 | 1 | 1 | |
| Laikipia, 9718 | Laikipia | 1 | 1 | 1 | 1 | 1 | 1 | |
| Nakuru, 7024 | Nakuru | 1 | 1 | 1 | ||||
| Western, 37358 | Bungoma | 3074 | 1 | 1 | 1 | |||
| Busia | 1629 | 1 | 1 | |||||
| Elgeyo-Marakwet | 2722 | 1 | 1 | 1 | 1 | 1 | ||
| Kakamega | 3520 | 1 | 1 | |||||
| Kericho | 4890 | 1 | 1 | 1 | 1 | |||
| Kisii | 2196 | 1 | 1 | 1 | 1 | |||
| Kisumu | 2093 | 1 | 1 | 1 | 1 | |||
| Nandi | 2745 | 1 | ||||||
| Siaya | 2523 | 1 | 1 | 1 | ||||
| South_Nyanza | 5714 | 1 | 1 | |||||
| Trans_Nzoia | 2468 | 1 | 1 | 1 | ||||
| Uasin_Gishu | 3784 | 1 | 1 | |||||
| Central, 63142 | Embu | 2714 | 1 | 1 | 1 | |||
| Kiambu | 2448 | 1 | 1 | 1 | 1 | |||
| Kirinyaga | 1437 | 1 | 1 | 1 | ||||
| Kitui | 23020 | 1 | 1 | 1 | 1 | 1 | 1 | |
| Machakos | 13629 | 1 | 1 | 1 | 1 | 1 | ||
| Meru | 9922 | 1 | 1 | 1 | 1 | 1 | ||
| Muranga | 2476 | 1 | ||||||
| Nairobi | 684 | 1 | 1 | 1 | 1 | 1 | 1 | |
| Nyandarua | 3528 | 1 | 1 | 1 | 1 | 1 | 1 | |
| Nyeri | 3284 | 1 | 1 | 1 | 1 | |||
| Turkana, 60824 | Turkana | 1 | 1 | 1 | 1 | 1 | ||
| Coastal, 33807 | Kilifi | 12414 | 1 | 1 | 1 | 1 | 1 | |
| Kwale | 8257 | 1 | 1 | 1 | 1 | 1 | 1 | |
| Lamu | 6506 | 1 | 1 | 1 | 1 | 1 | ||
| Mombasa | 210 | 1 | 1 | 1 | 1 | 1 | ||
| Taita | 6420 | 1 | 1 | 1 | 1 | 1 | 1 |
| Influence Diagram | 6cSurvey Year | |||||||
| Region | 1977 | 1978 | 1980 | 1981 | 1982 | 1983 | 1985 | |
| Marsabit | 125142 | 120018 | - | 91538 | - | - | 68656 | |
| Eastern | 98231 | 135743 | 19578 | - | - | 23891 | 32801 | |
| Samburu | 89282 | 43219 | 809 | 8055 | 1482 | - | 31379 | |
| Tsavo | - | - | - | - | - | - | - | |
| Masailand | 262017 | 473869 | 197731 | 38082 | 40881 | 252054 | - | |
| Laikipia | 58315 | 57068 | - | 20703 | 15382 | - | 21544 | |
| Nakuru | - | - | - | - | - | - | - | |
| Western | - | - | - | - | - | - | - | |
| Central | 4730 | 6050 | 6036 | - | - | 2650 | - | |
| Turkana | 40832 | - | - | 22484 | 27711 | - | - |
| Chance Node | Parent's | |||
| and | Conditioning | |||
| Parameters | Values | |||
| Bt | very arid, | 3000., 1. | 1000., 3. | 1000., 10. |
| do nothing | ||||
| k0, |
very arid, | 8000., 1. | 8000., 10. | 8000., 10. |
| anti-poaching | ||||
| very arid, | 2000., 1. | 2000., 10. | 2000., 10. | |
| expand ranching | ||||
| arid, | 3000., 1. | 1000., 10. | 1000., 10. | |
| do nothing | ||||
| arid, | 8000., 1. | 8000., 10. | 8000., 10. | |
| anti-poaching | ||||
| arid, | 2000., 1. | 2000., 10. | 2000., 10. | |
| expand ranching | ||||
| semi-arid, | 3000., 1. | 1900., 10. | 5500., 10. | |
| do nothing | ||||
| semi-arid, | 8000., 1. | 8000., 10. | 8000., 10. | |
| anti-poaching | ||||
| semi-arid, | 2000., 1. | 2000., 10. | 2000., 10. | |
| expand ranching | ||||
| non-arid, | 3000., 1. | 5900., 5. | 5500., 10. | |
| do nothing | ||||
| non-arid, | 8000., 1. | 8000., 10. | 8000., 10. | |
| anti-poaching | ||||
| non-arid, | 2000., 1. | 2000., 10. | 2000., 10. | |
| expand ranching | ||||
| Kt | Bt | 0.0, .10 | .000, .107 | .000, .189 |
| ft | t, 0-.5 | .2, .05, | .281, .094 | .3, .080 |
| f0, |
.001 | .001 | .001 | |
| t, .5-.99 | .2, -.05, | .242, -.022 | .200, -.050 | |
| .001 | .001 | .001 | ||
| rt | t, infrequent | .05, .1, | .053, .032 | .036, .094 |
| r0, |
.001 | .002 | .001 | |
| t, frequent | .05, -.1, | .078, -.200 | .059, -.200 | |
| .001 | .002 | .002 | ||
| Nt | t, ft, rt, Kt | 1000., .600, .050, | 1053., .600, .014, | 1053, .703, .014 |
| N0, P, c, | .001 | .003 | .002 | |
=.3in Figure 1. A directed, acyclic graph.
=.3in Figure 2. Cheetah viability influence diagram.
=.3in Figure 3. First three letters of influence diagram regions (upper-left), see Table 6. Kenya's climate (upper-right). Kenya's land use areas (lower-left). Kenya's protected areas (lower-right). Each rasterization is over a 50 by 50 grid.
=.3in Figure 4. Observed and one-step-ahead predictions of herbivore count (Bt) and detection fraction (Dt) versus time. A predicted value is the average of 100 realizations of the variable at each of the observation times. All parameter estimates computed with a hypothesis relative importance weight (cH) of 0.5 (left column), and 0.0 (right column). Squares: observed, diamonds: predicted.
=.3in Figure 5. Mean of detection fraction (Dt) by region for the year 2000 under the management option: do nothing. Consistent (cH=.5) parameter values were used.