Berges,
J. A. and M. Mulholland. 2008. Chapter 32: Enzymes and N Cycling. pp. 1361-1420. In D. G. Capone et al.
Nitrogen in the Marine Environment. Elsevier. PDF Copy
Bootsma, H., E. Jensen, E. B. Young and J.
A. Berges [Organizers]. 2005. Cladophora
Research and Management in the Great Lakes .
Proceedings of a Workshop Held at the Great Lakes WATER Institute, December 8,
2004. University of Wisconsin-Milwaukee. http://www.uwm.edu/Dept/GLWI/cladophora/page_report.html
Harrison,
P. J. & J. A. Berges. 2005. Chapter 3. Marine
culture media. pp. 21-33. In R. A. Andersen [ed.], Algal Culturing
Techniques. Elsevier. PDF Copy
Andersen,
R. A., J. A. Berges, P. J. Harrison & M. M. Watanabe. 2005. Appendix A.
Recipes for freshwater and seawater media. pp. 429-538. In R. A. Andersen
[ed.], Algal Culturing Techniques. Elsevier.
Berges,
J. A.,
Collos,
Y., & J. A. Berges. 2003. Nitrogen metabolism in phytoplankton. In C. M. Duarte [ed.], Encyclopedia of Life Support Systems.
EOLSS Publishers (UNESCO). Online: http://www.eolss.net PDF Copy
Montsant A., Allen A. E., Coesel S., De Martino A., Falciatore
A., Mangogna M., Siaut M., Heijde M., Jabbari K., Maheswari U., Rayko E., Vardi A., Apt K. E., Berges J. A., Chiovitti
A., Davis A. K., Thamatrakoln K., Hadi
M. Z., Lane T. W., Lippmeier J. C., Martinez D.,
Parker M. S., Pazour G. J., Saito M. A., Rokhsar D. S., Armbrust E. V.,
and Bowler C. 2007. Identification and comparative genomic
analysis of signaling and regulatory components in the diatom Thalassiosira pseudonana.
J. Phycol. 43: 585-604. PDF Copy
Ribalet
F., Berges J. A., Ianora A., and Cassotti
R. 2007.
Growth inhibition of cultured marine phytoplankton by toxic
algal-derived polyunsaturated aldehydes. Aquat. Toxicol.
85: 219-227. PDF Copy
Young E. B., Dring M. J., and Berges J. A. (2007) Distinct patterns of
nitrate reductase activity in brown algae: light and
ammonium sensitivity in Laminaria digitata is
absent in Fucus
species. J. Phycol. 43: 1200-1208. PDF Copy
Young E. B., Dring M. J., Savidge G., Birkett D. A., Berges J. A. 2007. Seasonal variations in
nitrate reductase activity and internal N pools in
intertidal brown algae are correlated with ambient nitrate concentrations.
Plant Cell Environ. 30: 764-774. PDF Copy
Kirkpatrick,
A.J., Gerhardt, A., Dick, J.T.A., McKenna, M. & Berges, J.A. 2006. Use
of the multispecies freshwater biomonitor to assess
behavioral changes of Corophium volutator (Pallas, 1766) (Crustacea,
Amphipoda) in response to toxicant exposure in
sediment. Ecotoxicol. Environ. Saf. 64: 298-303. PDF
Copy
Kirkpatrick,
A.J., Gerhardt, A., Dick, J.T.A., Laming, P. & Berges, J.A. 2006. Suitability of Crangonyx pseudogracilis
(Crustacea: Amphipoda) as
an early warning indicator in the Multispecies Freshwater Biomonitor.
Env.
Sci. Pollut. Res. 13: 242-250. PDF Copy
Franklin,
D.J., Brussaard, C.P.D. & Berges, J.A. 2006. What is the role and
nature of programmed cell death in phytoplankton ecology? Eur. J. Phycol. 41: 1-14. PDF Copy
Young,
E.B., Lavery, P.S., van Elven,
B., Dring, M.J. & Berges, J.A. 2005. Nitrate reductase activity in macroalgae
and its vertical distribution in macroalgal epiphytes
of seagrasses. Mar. Ecol. Prog.
Ser. 288: 103-114. PDF Copy
Segovia,
M. & Berges, J.A. 2005. Effect of inhibitors of
protein synthesis and DNA replication on the induction of proteolytic
activities, caspase-like activities and cell death in
the unicellular chlorophyte Dunaliella
tertiolecta. Eur. J. Phycol.
40: 21-30. PDF Copy
Tomas,
J., Geffen, A.J., Allen, I.S. & Berges, J.A. 2004. Analysis of the
soluble matrix of vaterite otoliths
of juvenile herring (Clupea harengus): do crystalline otoliths
have less protein? Comp. Biochem. Physiol.
A Comp. Physiol. 139: 301-308. PDF Copy
Franklin, D. J.,
& J. A. Berges. 2004. Mortality in cultures of the dinoflagellate
Amphidinium carterae
during culture senescence and darkness. Proc. R. Soc. Lond.
B. 271: 2099-2107. PDF Copy
Armbrust, E.V., Berges, J.A., Bowler, C., Green,
B.R., Martinez, D., Putnam, N.H., Zhou, S., Allen, A.E., Apt, K.E., Bechner, M., Brzezinski, M.A., Chaal,
B.K., Chiovitti, A., Davis, A.K., Demarest, M.S., Detter, J.C., Glavina, T.,
Goodstein, D., Hadi, M.Z., Hellesten,
U., Hildebrand, M., Jenkins, B.D., Jurka, J., Kapitonov, V.V., Kroger, N., Lau, W.W.Y., Lane, T.W.,
Larimer, F.W., Lippmeier, J.C., Lucas, S., Medina,
M., Monstant, A., Obornik,
M., Parker, M.S., Palenik, B., Pazour,
G.J., Richardson, P.M., Rynearson, T.A., Saito, M.A.,
Schwartz, D.C., Thamatrakoln, K., Valentin, K., Vardi,
A., Wilkerson, F.P. & Rokhsar, D.S. 2004.
The genome of the diatom Thalassiosira pseudonana: ecology, evolution and metabolism. Science (Washington, D.C.). 306: 79-86. PDF Copy
Montagnes, D. J. S. & J.
A. Berges. 2004. Determining parameters of the numerical response. Microb.
Ecol. 48: 139-144. PDF
Copy
Wilson,
S., C. Blake, J. A. Berges, & C. A. Maggs. 2004. Environmental
tolerances of free-living coralline algae (maerl):
implications for European marine conservation. Biological
Conservation. 120: 283-293. PDF Copy
Franklin,
D. J., O. Hoegh-Guldberg, R. J. Jones & J. A.
Berges. 2004. Cell death and degeneration in the symbiotic dinoflagellates
of the Stylophora pistillata
(Esper) in response to the combined effects of
elevated temperature and light. Mar. Ecol. Prog. Ser.
272: 117-130. PDF Copy
Berges, J. A., C. E. Gibson & B. M.
Stewart.
2004. Physiological responses of phytoplankton communities in the Irish Sea to
simulated upwelling. Hydrobiologia 517: 121-132. PDF Copy
Segovia,
M., L. Haramaty, J. A. Berges, & P. G. Falkowski. 2003. Caspases and
cell death in a unicellular chlorophyte alga: the
evolution of apoptosis. Plant Physiol. 132: 95-105. PDF Copy
Perez-Llorens, J. L., E. Benitez, J. J. Vergara
& J. A. Berges. 2003. Characterization of proteolytic
enzyme activities in macroalgae. Eur. J. Phycol. 38: 55-64. PDF Copy
Berges, J. A., D. E.
Varela & P. J. Harrison. 2002. Effects of temperature on growth rate,
composition and nitrogen metabolism in the marine diatom Thalassiosira
pseudonana (Bacillariophyceae).
Mar. Ecol. Prog. Ser. 225: 139-146. PDF Copy
Roberts, D., H. M.
Moore, J. Berges, J. W. Patching, M. W. Carton & D. F. Eardly,
2001, Sediment distribution, hydrolytic enzyme profiles and bacterial
activities in the guts of Oneirophanta mutabilis, Psychropotes
longicauda and Pseudostichopus
villosus: what do they tell us about digestive
strategies of abyssal holothurians? Prog. Oceanogr. 50: 443-458. PDF Copy
Berges, J. A., D. J.
Franklin & P. J. Harrison. 2001. Evolution of an artificial seawater
medium: Improvements in enriched seawater, artificial water over the last two
decades. J. Phycol. 37: 1138-1145. PDF Copy
Boyd, P. W., N. D.
Sherry, J. A. Berges, J. K. B. Bishop, S. E. Calvert, M. A. Charette, S. J. Giovannoni, R. Goldblatt, P. J.
Harrison, S. B. Moran, S. Roy, M. Soon. 1999. Transformations of biogenic
particulates from the pelagic to the deep ocean realm. Deep-Sea Research 46:
2761-2792. PDF
Copy
Boyd,
P., Berges, J. & Harrison, P. 1998. In vitro iron enrichment
experiments at iron-rich and -poor sites in the NE subarctic Pacific. J. Exp. Mar. Biol. Ecol. 227:
133-151. PDF
Copy
Vergara,
J.J., Berges, J.A. & Falkowski, P.G. 1998. Diel
periodicity of nitrate reductase activity and protein
levels in the marine diatom Thalassiosira weissflogii (Bacillariophyceae).
J. Phycol.
34: 952-961. PDF Copy
Berges, J. A. &
P. G. Falkowski. 1998. Physiological stress and cell
death in marine phytoplankton: induction of proteases in reponse
to nitrogen- or light-limitation. Limnol. Oceanogr. 43: 129-135.
PDF
Copy
Berges,
J.A. 1997. Algal nitrate reductases.
Eur. J. Phycol.
32: 3-8. PDF
Copy
Berges,
J.A. 1997. Ratios, regression statistics, and ''spurious''
correlations. Limnol. Oceanogr. 42: 1006-1007. PDF Copy
Berges,
J. A., & P. G. Falkowski. 1996.
Cell-associated proteolytic enzymes from marine
phytoplankton. J. Phycol. 32: 566-574. PDF
Copy
Berges, J. A., D. O. Charlebois, D. C. Mauzerall,
& P. G. Falkowski. 1996. Differential effects of nitrogen limitation on photosynthetic efficiency
of Photosystems I and II in microalgae. Plant. Physiol. 110: 689-696. PDF Copy
Fisher,
A. E., J. A. Berges, & P. J. Harrison. 1996. Does light quality affect the sinking rate of
marine diatoms? J. Phycol. 32: 353-360. PDF Copy
Hurd,
C. L., J. A. Berges, J. Osborne & P. J. Harrison. 1995. An in vitro
nitrate reductase assay for marine macroalgae: optimization and characterization of the enzyme
for Fucus gardneri
(Phaeophyta). J. Phycol.
31: 835-843. PDF Copy
Berges, J. A., W. P. Cochlan, & P. J. Harrison. 1995. Laboratory and field
responses of algal nitrate reductase to diel periodicity in irradiance, nitrate exhaustion, and the
presence of ammonium. Mar. Ecol. Prog. Ser. 124:
259-269. PDF
Copy
Berges,
J. A., & P. J. Harrison. 1995a. Nitrate reductase
activity quantitatively predicts the rate of nitrate incorporation under
steady-state light limitation: a revised assay and characterization of the
enzyme in 3 species of marine phytoplankton. Limnol. Oceanogr. 40: 82-93. PDF
Copy
Berges,
J. A., & P. J. Harrison. 1995b. Relationships
between nitrate reductase activity and rates of
growth and nitrate incorporation under steady-state light or nitrate limitation
in the marine diatom Thalassiosira pseudonana (Bacillariophyceae).
J. Phycol. 31: 85-95. PDF
Copy
Berges, J. A., D. J.
S. Montagnes, C. L. Hurd,
& P. J. Harrison. 1994. Fitting ecological and physiological data to
rectangular hyperbolae: a comparison of methods using Monte Carlo simulations.
Mar. Ecol. Prog. Ser. 114: 175-183. PDF Copy
Montagnes, D. J. S., J. A.
Berges, F. J. R. Taylor, & P. J. Harrison. 1994. Estmating
carbon, nitrogen, protein and chlorophyll a from cell volume in marine
phytoplankton: a comparison of optical and electronic particle counting
techniques and the effect of fixation with Lugol's
iodine. Limnol. Oceanogr. 39: 1044-1060. PDF Copy
Berges,
J. A., & C. Virtanen. 1993. Expanding the capabilities of
laboratory instruments using built-in microprocessors and serial interfaces:
adapting an LKB Ultrospec II UV spectrophotometer for
scanning and enzyme kinetic analyses. Comput. Biol. Med. 23: 131-141. PDF
Copy
Berges,
J. A., & P. J. Harrison. 1993. Relationship between nucleoside diphosphate kinase activity and
light-limited growth rate in the marine diatom Thalassiosira
pseudonana (Bacillariophyceae).
J. Phycol. 29: 45-53. PDF
Copy
Berges,
J. A., A. E. Fisher, & P. J. Harrison. 1993. A comparison of Lowry,
Bradford, and Smith protein assays using different protein standards and
protein purified from the marine diatom Thalassiosira
pseudonana. Mar. Biol. (Berl.)
115: 187-193. PDF Copy
Berges,
J. A., J. C. Roff, & J. S. Ballantyne. 1993. Enzymatic
indexes of respiration and ammonia excretion: relationships to body size and
food levels. J. Plankton Res. 15: 239-254. PDF Copy
Berges,
J. A., & J. S. Ballantyne. 1991. Size-scaling
of whole-body maximal enzyme activities in aquatic crustaceans. Can J. Fish. Aquat.
Sci. 48: 2385-2394. PDF
Copy
Ballantyne,
J.S. & Berges, J.A. 1991. Enzyme activities of gill, hepatopancreas, mantle, and adductor muscle of the oyster (Crassostrea virginica)
after changes in diet and salinity. Can. J. Fish. Aquat.
Sci. 48: 1117-1123. PDF
Copy
Berges,
J. A., J. C. Roff, & J. S. Ballantyne. 1990. Relationship
between body size, growth rate, and maximal enzyme activities in the brine
shrimp, Artemia franciscana.
Biol. Bull. 179: 287-296. PDF Copy
Hopcroft,
R. R., J. C. Roff, & J. A. Berges. 1990. Size-fractionated sedimentation in a tropical
neritic ecosystem near Kingston, Jamaica. Cont. Shelf
Res. 10: 795-806. PDF Copy
Berges,
J. A., & J. S. Ballantyne. 1989. 3-Hydroxy-3-methylglutaryl
coenzyme A lyase from tissues of the oyster, Crassostrea virginica,
the little skate, Raja erinacea and the lake charr, Salvelinus namaycush: a simplified spectrophotometric
assay. Comp. Biochem. Physiol. B 93: 583-588. PDF
Copy
Berges,
J. A. 2002. Protease (LAP) measurements. pp. 9-15. In C. D. P. Brussaard
[ed.] Cruise Report: MOMAP1 (64PE194) 19 April-3 May 2002. Netherlands
Institute of Sea Research. Texel. 24 p.
Andersen, R. A., and J. A. Berges.
2001. Meeting Report: 7th International Phycological
Congress, Thessaloniki, Greece, August 18-25, 2001. Protist 152: 249-253. PDF
Copy
Benitez, E., J. J. Vergara, J.
A. Berges, and J. L. Perez-Llorens.
2001. Actividades proteolíticas
en macroalgas marinas, p. 378. In F. M. Canovas and F. J. Florencio, [eds.], Anvances
en el metabolismo del nitrogeno: biouímica, fisiología y biología molecular.
Universidad de Málaga. PDF Copy
Berges,
J. A. 1996. Book Review: Round & Chapman 1995. Eur. J. Phycol.
31: 291-292. PDF
Copy
Berges,
J. A. 1999. Book review: Cooksey 1998. Eur. J. Phycol.
34: 317-318. PDF
Copy
Vergara,
J. J., J. A. Berges, and P. G. Falkowski.
2001. Ciclos diarios de la nitrato reductasa en la diatomea marina Thalassiosira
weissflogii, p. 215-223. In F. M. Canovas and F. J. Florencio, [eds.], Anvances
en el metabolismo del nitrogeno: biouímica, fisiología y biología molecular.
Universidad de Málaga. PDF Copy