Hoot, S. B., W. C. Taylor, and N. S. Napier. 2006. Phylogeny and biogeography of Isoëtes based on nuclear and chloroplast DNA sequence data. Systematic Botany 31: 449-460.
Schuettpelz, E. and S. B. Hoot. 2006. Inferring the root of Isoëtes: Exploring the alternatives in the absence of an acceptable outgroup. Systematic Botany 31: 258-270.
Hoot, S. B., N. S. Napier, and W. C. Taylor. 2004. Revealing unknown or extinct lineages within Isoëtes (Isoëtaceae) using DNA sequences from hybrids. American Journal of Botany 91: 899-904.
Schuettpelz, E. and S. B. Hoot. 2004. Phylogeny and biogeography of Caltha (Ranunculaceae)
based on chloroplast and nuclear DNA sequences. American Journal of Botany 91: 247 253.
Schuettpelz, E., S. B. Hoot, R. Samuel, and F. Ehrendorfer. 2002. Multiple origins of Southern Hemisphere Anemone (Ranunculaceae) based on plastid and nuclear sequence data. Plant Systematics and Evolution, 231: 142-151.
Walsh, B. M. and S. B. Hoot. 2001. Phylogenetic relationships of Capsicum (Solanaceae) using DNA sequences from two noncoding regions: The chloroplast atpB-rbcL spacer region and nuclear waxy introns. International Journal of Plant Sciences 162: 1409-1418.
Hoot, S. B., S. Magallon, and P. R. Crane. 1999. Phylogeny of basal eudicots based on three molecular data sets: atpB, rbcL, and 18S nuclear ribosomal DNA sequences. Annals of the Missouri Botanical Garden 86: 1-32.